Zhengdeng Lei, PhD

Zhengdeng Lei, PhD

2009 - Present Research Fellow at Duke-NUS, Singapore
2007 - 2009 High Throughput Computational Analyst, Memorial Sloan-Kettering Cancer Center, New York
2003 - 2007 PhD, Bioinformatics, University of Illinois at Chicago

Wednesday, May 11, 2011

GSAA

High, mid, low activity, e.g. p53
mid vs low -->(GSEA)  ES
high vs low --> High ES??




Supposed we have 200 cell lines, obtain the expression before drug treatment, and obtain GI50 for M drugs.
(NCI60, too small?)



Drug1
Drug2
Drug3
... ...
DrugM
GeneSet1
Corr(1,1) = GSAA1vsGI50 for drug 1 across all cell lines
Corr(1,2) = GSAA1vsGI50 for drug2 across all cell lines



GeneSet2





GeneSet3





GeneSet4





... ...





GeneSetN







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