mid vs low -->(GSEA) ES
high vs low --> High ES??
Supposed we have 200 cell lines, obtain the expression before drug treatment, and obtain GI50 for M drugs.
(NCI60, too small?)
Drug1 | Drug2 | Drug3 | ... ... | DrugM | |
GeneSet1 | Corr(1,1) = GSAA1vsGI50 for drug 1 across all cell lines | Corr(1,2) = GSAA1vsGI50 for drug2 across all cell lines | |||
GeneSet2 | |||||
GeneSet3 | |||||
GeneSet4 | |||||
... ... | |||||
GeneSetN |
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