http://rna.genomics.purdue.edu/2013_Practical_Biocomputing/Final_projects/SNP_calling_pipeline_for_RNA-seq_data
http://rna.genomics.purdue.edu/2013_Practical_Biocomputing/Final_projects/SNP_calling_pipeline_for_RNA-seq_data/V._Pipeline_status
http://rna.genomics.purdue.edu/2013_Practical_Biocomputing/Final_projects/SNP_calling_pipeline_for_RNA-seq_data
https://www.google.com/search?q=bwa+gatk+pipeline+perl&aq=f&oq=bwa+gatk+pipeline+perl&aqs=chrome.0.57.7097j0&sourceid=chrome&ie=UTF-8
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